PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 204aa    MW: 22859.3 Da    PI: 9.1405
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06472.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.54e-32109165158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep++VNaKQy++Il+RRq Rak+e+e+k+ +++rkpylheSRhkhAl RpRg+gGrF
  KHN06472.1 109 EEPVFVNAKQYHGILRRRQYRAKAESENKV-IRNRKPYLHESRHKHALTRPRGCGGRF 165
                 69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-36107168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.431108168IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27110165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23111133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23142165IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MHYKTLDNED DGQQQSESPM QPPSVNGISD PGISTQNVNV QYAAPGQLGT GHAMVPHVYP  60
YPDPYYRSIF APYDTQPYPP QAYSGQPMVH LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH  120
GILRRRQYRA KAESENKVIR NRKPYLHESR HKHALTRPRG CGGRFLNSKK DKNQNDDVAS  180
ADKSQSNINI NSNKNDQTSS DRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21108169162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0952530.0BT095253.1 Soybean clone JCVI-FLGm-7E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580212.11e-146PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP19e-67NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0B2PFW91e-151A0A0B2PFW9_GLYSO; Nuclear transcription factor Y subunit A-7
STRINGGLYMA05G29970.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-54nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]